Sequence
atgc intronic sequence ATGC exonic sequencegttgaaactattttatttggcaattctacttataaatcattactcatattgcttgtggacttttagGCAAATACACATGTAAATGTCCCCCAAGATCTAAAGGATGTGAAACTCTGGCAGGTAAATTATTTTCTTTA
Basic information
species | Glycine max |
transcript | GLYMA02G26620.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G26620.2 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G118467_T04 (Zea mays), 3'ss of exon 6
-------------------------------gttgaaactattttatt-tggcaattctactta--taaatcattactcatattgcttgtggacttttagGCAAATACACATGTAAATGTCCCCCAAGATCTAAAGGATGTGAAACTCTGGCAGGTAAATTATTTTCTTTA
| | | ||||| || | ||| | || || || | || | | || |||||||||||||| ||||||||| ||||| ||||| |||||||| || ||| ||
attaatgcttttccctcactcttattggcacactaatataattttgttgtcacaagggtctctagcctcattgttttttctaaacaacttcaatttgcagGCAAATACACATATAAATGTCCATCAAGACCTAAAAGATGTGAAGCTATGGGAG-----------------
upper sequence: GLYMA02G26620.2 (Glycine max), 3'ss of exon 6
lower sequence: AT3G58580.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------gttgaaactattttatttggcaattctacttata---------aatcattactcatattgc-ttgtgg--actt--ttagGCAAATACACATGTAAATGTCCCCCAAGATCTAAAGGATGTGAAACTCTGGCAGGTAAATTATTTTCTTTA
| |||| || || | | | ||| || ||| | | || |||| |||||| |||| ||||||||| |||||||||||||| | |||||||| ||||||||||| |||||||||
gtactggttctttttttttttccattctcatgagaactgttagtttctgtatatgctcttttagtgaaagccaatgaattttcttattttgttgtggcaacttgtttagGCAAACACACATGTAAATGTTCAACAAGATCTGAAGGATGTGAAGCTCTGGCAG----------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatttggcaattctacttataaatcattactcatattgcttgtggacttttagGCAAATACACATGTAAATGTCCCCCAAGATCTAAAGGATGTGAAACTCTGGCAGGTAAATTATTTTCTTTA
ctttt CT-rich tract
aattctacttataaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgaaactattttatttggcaattctacttataaatcattactcatattgcttgtggacttttagGCAAATACACATGTAAATGTCCCCCAAGATCTAAAGGATGTGAAACTCTGGCAGGTAAATTATTTTCTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG