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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaattttttcctaagtgttattagaattctaaatttgttggtttgttcagtgtttgtttccttctatttctagGTGGATGCGCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTGTTGTGAACTCCAACCACTTTAATCGGT

Basic information

species Glycine max
transcript GLYMA02G26390.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G26390.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G44170.3 (Arabidopsis thaliana), 3'ss of exon 6
gtaataaattttttcctaagtgttattagaattctaaatttgttggtttgttcagtgtttgtttccttctatttctagGTGGATGCGCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTGTTGTGAACTCCAACCACTTTAATCGGT
||||    |     | ||||    |||||| |  | |     ||  | | ||     ||   ||   ||| | |  || | |||||  | |||  ||||||||||||||||||||| ||||||||  | || || |||||| |||| ||| | || ||||| || |||||| |||| |
gtaacgt-taagaacttaag----attagattcttgatgaattttttgtatttgacattctcttttctct-tcttaagATTGATGCCATGAAGCTTGAATTGGAGAAATTTTATGGGAAGAACCCTATAGAGTCGAAAGATATGTCACGTATCGTAAACTCGAATCACTTTGATCGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattagaattctaaatttgttggtttgttcagtgtttgtttccttctatttctagGTGGATGCGCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTGTTGTGAACTCCAACCACTTTAATCGGT
        ttctaaa  putative branch site (score: 2)
                                tgtttgtttccttcta  putative PPT
      aattctaaatttgtt  TA-rich tract