Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgttcttaagcacattctcatgttttgttgcagcattgcaatttgtgttgttttattttgggattttttcttaataaatttgttttctagaaaacagGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGATCTATGCGATACAGTCCAT

Basic information

species Glycine max
transcript GLYMA02G17260.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677410|gb|BQ629761.1|BQ629761
EST:     ATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCG                         GGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGC
genomic: ATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGgtatgtggtt ... tagaaaacagGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGC
EST: gi|207688695|gb|GD671214.1|GD671214
EST:     ATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCG                         GGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAAT
genomic: ATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGgtatgtggtt ... tagaaaacagGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAAT
EST: gi|17023612|gb|BM094646.1|BM094646
EST:     ATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCG                         GGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGC
genomic: ATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGgtatgtggtt ... tagaaaacagGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGC
EST: gi|207705814|gb|GD686890.1|GD686890
EST:     CTTCCTTTACGTCCG                         GGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGC
genomic: CTTCCTTTACGTCCGgtatgtggtt ... tagaaaacagGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgttgttttattttgggattttttcttaataaatttgttttctagaaaacagGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGATCTATGCGATACAGTCCAT
                          tcttaat  putative branch site (score: 3)
                                    tttgttttct  putative PPT
        ttttattttgggattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattgttcttaagcacattctcatgttttgttgcagcattgcaatttgtgttgttttattttgggattttttcttaataaatttgttttctagaaaacagGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGATCTATGCGATACAGTCCAT

- - - - - - - -cattctc
- - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - tgttgtt