Sequence
atgc intronic sequence ATGC exonic sequence...atggttctaagtatgcttatagagtaatggtgattctcaaaacatgagagatatttttcaagagcaaataagaattcttcttcaaataaaacacgtgcagGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTA
Basic information
species | Glycine max |
transcript | GLYMA02G14860.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G14860.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G34030.1 (Arabidopsis thaliana), 3'ss of exon 7
atggttctaagtatgcttatagagtaatggtgattctcaaaacatgagagatatttttcaagagcaaataagaattcttcttcaaataaaacacgtgcagGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTA
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----------gtatgttta---attcttggt-----taagagtctgagagatttgatt--aggataagccagattctaagctcgggt---cttcattcagGTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTATGTTCATTTGGCCAA
upper sequence: GLYMA02G14860.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 3'ss of exon 7
--atggttctaagtatgcttatagagtaatggtgattctcaaaaca---tgagagatatttttcaagagcaaataagaattcttcttcaaataaaacacgtgcagGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTA
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taatgagtgcaaa---gcttttgagttacattttctctttaatatggttcttttgttagtacttttgaatcacaaaggaaattaatacagagaaaa--tgcacagGTTCCTAAAATTACTATTATTGTTGGCGGAAGCTTTGGTGCTGGAAATTATGCAATGTGTGGGCGTGCATATAGTCCCAATTTCATGTTCCTTTGGCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9820577|gb|BE556087.1|BE556087EST: GCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAA GTACCTAAAGTCACTAT
genomic: GCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAGgtttgtggtt ... acacgtgcagGTACCTAAAGTCACTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagagatatttttcaagagcaaataagaattcttcttcaaataaaacacgtgcagGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTA
aaataagaattctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atggttctaagtatgcttatagagtaatggtgattctcaaaacatgagagatatttttcaagagcaaataagaattcttcttcaaataaaacacgtgcagGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTA
- - - - - gtatgct
- - - - - - - - - - - - -aatggtg
- - - - - - - - - - - - - - - - - - - - -acatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa