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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattttcctgcattgtgtttttcattctattatttttcattatgcttacctgtttattattaatgaagatgttttcaactgtatttgcagGGTGTGACGCACTTGCTTGCACA

Basic information

species Glycine max
transcript GLYMA02G14210.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327207|gb|FK018089.1|FK018089
EST:     AGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATG                         GGTGTGACGCACTTGCTTGCACA
genomic: AGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcc ... gtatttgcagGGTGTGACGCACTTGCTTGCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattatgcttacctgtttattattaatgaagatgttttcaactgtatttgcagGGTGTGACGCACTTGCTTGCACA
                      tattaat  putative branch site (score: 2)
                 tttattattaatgaag  TA-rich tract