1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttgttaatctatttatgtaccaatgagaaaaggcttatactgagtacacatgcctgatttcacttttgtacattctgaacattatatcagATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCATTACATCCACCTCAACCAGGGCTGATTC
species | Glycine max |
transcript | GLYMA02G13860.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGATCCTTCAACCGCACTA-GTTTTCCTCTAGATEST: gi|208129514|gb|GD930116.1|GD930116
genomic: AGGACTTCTTGCTAAAGATgtaagttgtt ... attatatcagATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGAT
EST: AGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGATEST: gi|193493841|gb|FK458463.1|FK458463
genomic: AGGACTTCTTGCTAAAGATgtaagttgtt ... attatatcagATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGAT
EST: GGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGATEST: gi|15814049|gb|BI786324.1|BI786324
genomic: GGACTTCTTGCTAAAGATgtaagttgtt ... attatatcagATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGAT
EST: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGAT
genomic: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatatcagATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGAT
tatactgagtacacatgcctgatttcacttttgtacattctgaacattatatcagATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCATTACATCCACCTCAACCAGGGCTGATTC
gcctgat putative branch site (score: 4)
aacattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgttaatctatttatgtaccaatgagaaaaggcttatactgagtacacatgcctgatttcacttttgtacattctgaacattatatcagATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCATTACATCCACCTCAACCAGGGCTGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT