1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caattattctttatatataattgatgattggcatatatttttgaaaacctctgcattctcttccaagttaaattgacacactgcatttttcatttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT
species | Glycine max |
transcript | GLYMA02G13860.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCTACTGTAAATCCACGGCTGGATTTTAATATTEST: gi|208266542|gb|GE062805.1|GE062805
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATT
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATTEST: gi|208316755|gb|GE115383.1|GE115383
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATT
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCTACAGTAAATCCACGG
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGG
aacctctgcattctcttccaagttaaattgacacactgcatttttcatttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT
aattgac putative branch site (score: 3)
tttttcattt putative PPT
atttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattattctttatatataattgatgattggcatatatttttgaaaacctctgcattctcttccaagttaaattgacacactgcatttttcatttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG