1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cccctacatatttaacttagtagttgaggttgaggttgttcattatcttcaaatgatgttgtccaattaaggcttatttcattgatttggttgtttgcagCACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTCTTGGAATGGTGCATTATTGGTCTATTGACTATTGAAAATGTTCTATCCT
species | Glycine max |
transcript | GLYMA02G12560.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTTGCCCAACGCTTTGGAAACCTGGATTTCAAATTGAAATTTGTTGAG CACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTCEST: gi|16344619|gb|BI970214.1|BI970214
genomic: AAGTTGCCCAACGCTTTGGAAACCTGGATTTCAAATTGAAATTTGTTGAGgtatttgagt ... ttgtttgcagCACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTC
EST: AAGTTGCCCAACGCTTTGGAAACCTGGATTTCAAATTGAAATTTGTTGAG CACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTCEST: gi|31458938|gb|CD400966.1|CD400966
genomic: AAGTTGCCCAACGCTTTGGAAACCTGGATTTCAAATTGAAATTTGTTGAGgtatttgagt ... ttgtttgcagCACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTC
EST: AAGTTGCCCAACGCTTTGGAAACCTGGATTTCAAATTGAAATTTGTTGAG CACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTC
genomic: AAGTTGCCCAACGCTTTGGAAACCTGGATTTCAAATTGAAATTTGTTGAGgtatttgagt ... ttgtttgcagCACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTC
tcttcaaatgatgttgtccaattaaggcttatttcattgatttggttgtttgcagCACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTCTTGGAATGGTGCATTATTGGTCTATTGACTATTGAAAATGTTCTATCCT
cattgat putative branch site (score: 4)
ttatttcattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccctacatatttaacttagtagttgaggttgaggttgttcattatcttcaaatgatgttgtccaattaaggcttatttcattgatttggttgtttgcagCACAATATTCATTTCCTACAAGAAGTTCTCCAGAACAGGAAATCAGATTTCTTGGAATGGTGCATTATTGGTCTATTGACTATTGAAAATGTTCTATCCT
cccctac
- - - - - - - - - - - gttgagg
- - - - - - - - - - - - -gaggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg