1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatatatgtaaatatacttttatgtttttccttctattgatgggattatgattgtaacattcagttgagttcatgaaaaattcaattaatgcttttgcagGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCATCTTGGTAAAAGTA
species | Glycine max |
transcript | GLYMA02G11300.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGG GGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATGEST: gi|20812041|gb|BQ296519.1|BQ296519
genomic: TTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGGgtaatgttca ... gcttttgcagGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATG
EST: TTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGG GGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATGEST: gi|17153859|gb|BM143792.1|BM143792
genomic: TTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGGgtaatgttca ... gcttttgcagGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATG
EST: TTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGG GGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATG
genomic: TTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGGgtaatgttca ... gcttttgcagGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATG
ttatgattgtaacattcagttgagttcatgaaaaattcaattaatgcttttgcagGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCATCTTGGTAAAAGTA
tgctttt CT-rich tract
ttcatgaaaaattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatgtaaatatacttttatgtttttccttctattgatgggattatgattgtaacattcagttgagttcatgaaaaattcaattaatgcttttgcagGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCATCTTGGTAAAAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - -ccttcta
- - - - - - - - - - - - - - - - - - -tgatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa