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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactatttatctttttacgatgttggttgataaaaatgaaaatttcaccttattgtagctcattacaattgtgtgcttctccattcttgtcagGTTTCTCGTGGTTTGAATAATTTTCCTCTTCTATTTGCCTTGATGCGAGTTGTTAGTAGCCTTTTGCAAAACCCTCACATCCAAATTGAACCATAT

Basic information

species Glycine max
transcript GLYMA02G10220.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427071|gb|CA938591.1|CA938591
EST:     CAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAG                         GTTTCTCGTGGTTTGAATAATTTTCCTCTTCTATTTGCCTTGATGCGAGTT
genomic: CAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGgtaatactat ... ttcttgtcagGTTTCTCGTGGTTTGAATAATTTTCCTCTTCTATTTGCCTTGATGCGAGTT
EST: gi|208161279|gb|GD963453.1|GD963453
EST:     CAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAG                         GTTTCTCGTGGTTTGAATAATTTTCCTCTTCTATTTGCCTTGATGCGAGTT
genomic: CAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGgtaatactat ... ttcttgtcagGTTTCTCGTGGTTTGAATAATTTTCCTCTTCTATTTGCCTTGATGCGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatttcaccttattgtagctcattacaattgtgtgcttctccattcttgtcagGTTTCTCGTGGTTTGAATAATTTTCCTCTTCTATTTGCCTTGATGCGAGTTGTTAGTAGCCTTTTGCAAAACCCTCACATCCAAATTGAACCATAT
                                     cttctccattcttgtc  CT-rich tract
                       attacaatt  TA-rich tract