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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatgattcccgggtgttcaatgaatcaaataaaagattttcatattttaacaaggtaataacactttcagGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAGAAGGCATTCCTTTCTAGTGTCTAGTAAGCTTCTATTTCGACCTGAGGTG

Basic information

species Glycine max
transcript GLYMA02G09680.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13478196|gb|BG507770.1|BG507770
EST:     TACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATAT                         GTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAG
genomic: TACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATATgtgagtatga ... acactttcagGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAG
EST: gi|209718238|gb|BW677473.1|BW677473
EST:     TACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATAT                         GTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAG
genomic: TACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATATgtgagtatga ... acactttcagGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAG
EST: gi|51336380|gb|CO980246.1|CO980246
EST:     TACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATAT                         GTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAG
genomic: TACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATATgtgagtatga ... acactttcagGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaatgaatcaaataaaagattttcatattttaacaaggtaataacactttcagGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAGAAGGCATTCCTTTCTAGTGTCTAGTAAGCTTCTATTTCGACCTGAGGTG
                                        taataac  putative branch site (score: 1)
                                              cactttc  CT-rich tract
           aaataaaagattttca  TA-rich tract