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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacaactgcatatgttttgatagtttcagtaaatgtcccttgtattgtcaaaagttaaaaagattcactaccttcatgcagATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCCCGATTTGCCTCTTAAAG

Basic information

species Glycine max
transcript GLYMA02G08170.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0019g04310.t01 (Vitis vinifera), 3'ss of exon 6
gtgagtacaactgcatatgttttgatagtttcagtaaatgtcccttgtattgtcaaa-agttaaaaagattcactaccttcatgcagATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCCCGATTTGCCTCTTAAAG
|||||||    |       ||||| ||   ||   ||| |    ||  ||| |   | | ||   |      | |    ||||||||||| |||||||||||||||||| |||| |||||  | || || ||||     |||  ||||   ||||
gtgagtattgttcacagaattttggtatgatctccaaaagggttttacattcttggacaatttttattcaatagtgttctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789427|gb|BG652018.1|BG652018
EST:     TCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGC                         ATCATTGAAATCATGGATTTCAACACACC
genomic: TCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGCgtgagtacaa ... cttcatgcagATCATTGAAATCATGGATTTCAACACACC
EST: gi|5509077|gb|AI855635.1|AI855635
EST:     TCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCNCCTTTTCTAGC                         ATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCC
genomic: TCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGCgtgagtacaa ... cttcatgcagATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCC
EST: gi|298176465|gb|HO026700.1|HO026700
EST:     TCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTT-CTAGC                         ATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCTAAGGCC
genomic: TCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGCgtgagtacaa ... cttcatgcagATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCC
EST: gi|208220278|gb|GE017624.1|GE017624
EST:     CATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGC                         ATCATTGAAATCATGGATTTTCAACACACCAACCTGCTATGGCTCCAAGGC
genomic: CATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGCgtgagtacaa ... cttcatgcagATCATTGAAATCATGGA-TTTCAACACACCAACCTGCTATGGCTCCAAGGC
EST: gi|22933458|gb|BU550597.1|BU550597
EST:     TCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGC                         ATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCC
genomic: TCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGCgtgagtacaa ... cttcatgcagATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtaaatgtcccttgtattgtcaaaagttaaaaagattcactaccttcatgcagATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCCCGATTTGCCTCTTAAAG
                                         ctaccttc  CT-rich tract
                       aaaagttaaaaagatt  TA-rich tract