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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcttactgaatattatgattcattgctgttaaacagttcaatcattgatttcaatgttgccaatgcaaacttatatgtggttaactacttgtgtttcagTTTATACGCCAGAGCAGTTGACAGAGAAATATACCAATATTTCATTCCTTCTATACCTTCTAGCTTTGATCTCAATTGTTGCCTTGCATCACTCCATCTA

Basic information

species Glycine max
transcript GLYMA02G07510.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297759|gb|FG989965.1|FG989965
EST:     GTTCTTGGGAATGTTTTTTCTAGTTGCTTTTGGCAATCACCAATCGCCTG                         TTTATACGCCAGAGCAGTTGACAGAGAAATATACCAATATTTCATTCCTTC
genomic: GTTCTTGGGAATGTTTTT-CTAGTTGCTTTTGGCAATCACCAATCGCCTGgtatgtaaca ... tgtgtttcagTTTATACGCCAGAGCAGTTGACAGAGAAATATACCAATATTTCATTCCTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatttcaatgttgccaatgcaaacttatatgtggttaactacttgtgtttcagTTTATACGCCAGAGCAGTTGACAGAGAAATATACCAATATTTCATTCCTTCTATACCTTCTAGCTTTGATCTCAATTGTTGCCTTGCATCACTCCATCTA
                                  ggttaac  putative branch site (score: 3)
                      aaacttatat  TA-rich tract