1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgcatttttttcaatttgtttctatttgtgttaatatgatgttgctcacagaggttgcagtattatttattcactttcttcttggctatttacctacagAGCCATCTCATCTAGAAGAAGTGTTAAGAGAACAAATTGCTGAGGGACAACCTAGGACACATAGGCCTTGGAAGAAGATAATGGTTGTTGTGGAGGGGAT
species | Glycine max |
transcript | GLYMA02G07250.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAATGGTGCACGAGGATCAGGAGCAACAATTCGCGTTTTTCAACATAACG AGCCATCTCATCTAGAAGAAGTGTTAAGAGAACAAATTGCTGAGGGACAACEST: gi|17400406|gb|BM177188.1|BM177188
genomic: TAATGGTGCACGAGGATCAGGAGCAACAATTCGCGTTTTTCAACATAACGgtgggtatct ... ttacctacagAGCCATCTCATCTAGAAGAAGTGTTAAGAGAACAAATTGCTGAGGGACAAC
EST: TAATGGTGCACGAGGATCAGGAGCAACAATTCGCGTTTTTCAACATAACG AGCC-TNCTCATCTAGAAGAAGTGTTAAGAGAACAAATTGCTGAGGGACAA
genomic: TAATGGTGCACGAGGATCAGGAGCAACAATTCGCGTTTTTCAACATAACGgtgggtatct ... ttacctacagAGCCAT-CTCATCTAGAAGAAGTGTTAAGAGAACAAATTGCTGAGGGACAA
ctcacagaggttgcagtattatttattcactttcttcttggctatttacctacagAGCCATCTCATCTAGAAGAAGTGTTAAGAGAACAAATTGCTGAGGGACAACCTAGGACACATAGGCCTTGGAAGAAGATAATGGTTGTTGTGGAGGGGAT
tgctcac putative branch site (score: 2)
tttacct putative PPT
tattatttattcactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatttttttcaatttgtttctatttgtgttaatatgatgttgctcacagaggttgcagtattatttattcactttcttcttggctatttacctacagAGCCATCTCATCTAGAAGAAGTGTTAAGAGAACAAATTGCTGAGGGACAACCTAGGACACATAGGCCTTGGAAGAAGATAATGGTTGTTGTGGAGGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
-tgcattt
- - - - - - - - - - - - -tttgtgt
- - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - aggttgc