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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcagcttttagtttgcagcaaaaataagtgattagttgtagtattgtctgtctagattttaagaaactcttttttatgtttttgctgccttgtagACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAGATATGATGCTTCTAATGATGGTCAAGGCAACAGTCTGGAAAGTGAGCCT

Basic information

species Glycine max
transcript GLYMA02G07160.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31311168|gb|CD396371.1|CD396371
EST:     GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAG                         ACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|193492156|gb|FK455224.1|FK455224
EST:     GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAG                         ACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|15337611|gb|BI498267.1|BI498267
EST:     GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAG                         ACCAGTCATAGACCCTATCGCTTCAATATT
genomic: GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCAGTCATAGACCCTATCGCTTCAATATT
EST: gi|27425473|gb|CA936993.1|CA936993
EST:     GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAG                         ACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|10233075|gb|BE802020.1|BE802020
EST:     GAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAG                         ACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|192303510|gb|FG994488.1|FG994488
EST:     GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAG                         ACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgtctgtctagattttaagaaactcttttttatgtttttgctgccttgtagACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAGATATGATGCTTCTAATGATGGTCAAGGCAACAGTCTGGAAAGTGAGCCT
                                      tttttgct  CT-rich tract
               attttaagaaactctt  TA-rich tract