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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttattaatatctaattgagaccatgaagctttcatgtgaaaagtacatggttaagttggattcttcagtctcttgaagttgtaatggccatcgacttctatgttgtttcagGTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT

Basic information

species Glycine max
transcript GLYMA02G06790.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os07g03140.1 (Oryza sativa), 3'ss of exon 4
gtgagtttattaatatctaattgagaccatgaagctttcatgtgaaaagtacatggttaagttggattcttcagtctcttgaagttgtaatggccatcgacttcta--------tgttgtttcagGTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT
    ||   |   | |  ||    |  || |  |||||  |      | | |     |  |||   | ||     || |   |  |||| |  | ||  |||| ||        || |  ||||||| | || | | ||  || ||     | ||||   | |   ||| ||| || || ||| | ||||||||||||||||||||||| || ||| ||||||||
----gtgagtggttcttgaaaatggttcacgttgcttttttactctcaatcctcaagtgggttcagtactctgaactgtgatatctgtagta-ctatacacttataattagcattggttcttcagGTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCAT

upper sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM5G843914_T01 (Zea mays), 3'ss of exon 7
gtgagtt-tattaatatctaattgagaccatgaagctttcatgtgaaaagtacatggttaagttggattcttcagtctcttgaagttgtaatggccatcgacttctatgttgtttcagGTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT
||||| | ||||  |  ||  ||| | | |||    |||  |        || ||  | |  ||  | ||||| |      |   || | |     |  || ||| |  ||   ||||||   || | | ||  || ||||  || ||||   |||   ||| | | || || ||| | || |||||| |||||||||||||||||||| ||||||||
gtgagctatatttctgcctctttg-gtcgatgggaattttttt------atatattttcagatt--actcttcggcacaccg---ttctga-----actgatttcgacatt---tcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT

upper sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 3'ss of exon 8
gtgagtttattaatatctaattgagacc------atgaagctttcatgtgaaaagtacatggttaagttggattc-ttcagtctct---tgaagttgtaatggccatcgactt------ctatgttgtttcagGTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT
||| |  | || |||||      |  ||      | |  | |  | | |  |   |  |    ||||    |||| ||   | |||   |    |||  ||    ||   |||       |||    || ||| |||||||||| || |||||||||||| ||||   ||||| ||||| | ||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||
gtgcgccttttgatatcccccacacccccacccaagggggatcgcttattgatgattaactcctaagcacaattcatttgatatctatgtttgcttgccatccttataagcttgttgagttattcaattacagATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCATTCTGGATCAACATACATAATGCATTGGTGATGCAT

upper sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtttattaatatctaattgagacc------atgaagctttcatgtgaaaagtacatggttaagttggattc-ttcagtctct---tgaagttgtaatggccatcgactt------ctatgttgtttcagGTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT
||| |  | || |||||      |  ||      | |  | |  | | |  |   |  |    ||||    |||| ||   | |||   |    |||  ||    ||   |||       |||    || ||| |||||||||| || |||||||||||| ||||   ||||| ||||| | ||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||
gtgcgccttttgatatcccccacacccccacccaagggggATCACTTATTGATGATTAACTCCTAAGCACAATTCATTTGATATCTATGTTTGCTTGCCATCCTTATAAGCTTGTTGAGTTATTCAATTACAGATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggattcttcagtctcttgaagttgtaatggccatcgacttctatgttgtttcagGTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT
                                              ttgtttc  CT-rich tract
                      ttgtaat  TA-rich tract