Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatcatacgtgtttaatcttgcttgtgtcatatttgtggtttttccttgtctgtttcaaagtcattaattaatttgtcatgtcatatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT

Basic information

species Glycine max
transcript GLYMA02G06580.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06580.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os08g28680.1 (Oryza sativa), 3'ss of exon 4
gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatcatacgtgtttaatcttgcttgtgtcatatttgtggtttttccttgtctgtttcaaagtcattaattaatttgtcatgtcatatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT
                                     || |   |   ||   ||  | ||  | | | ||   |||| |   |   || ||   |         | | || |||  | | |||    || |||| |           |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| || || ||||||||||| |||||||| ||| | ||| | ||  | || ||||
------------------------------------gtagcgagtctcttcccattgatatagtgctttttagttcttcccaattaaatcttccagcaaacctgctttttggttctca-taattg--caacttgttac----------tagGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACACGATTGTATATGGCT

upper sequence: GLYMA02G06580.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os10g11260.2 (Oryza sativa), 3'ss of exon 4
gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatcatacgtgtttaatcttgcttgtgtcatatt-tgtggtttttccttg--tctgtttcaaagtcattaatt--aatttgtcatgtcatatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT
                                                   | | || ||  |     || |||  | |    |   ||  | | |  |||  |  ||  | |||| |    | |  ||||   ||   | ||  | |  ||  |||| |||||||||||||| || |||||||||||||| ||||| |||||  | || ||||||||||| ||||| ||||| || ||| || | || || ||| 
--------------------------------------------------gtgaagtgcaagaccaaggtataagatggggctttctatgctatatattttcccagtgaatatgttgcctcttaaccaatttctatgcattataacttgcattcagGTATACCATCCAAATATTGATTTGGAAGGAAATGTATGCCTGAACATTTTGCGTGAAGATTGGAAGCCTGTTCTCAACATCAACACTGTTATTTATGGCC

upper sequence: GLYMA02G06580.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os10g11260.3 (Oryza sativa), 3'ss of exon 4
gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatcatacgtgtttaatcttgcttgtgtcatatttgtggtttttccttgt-ctgtttcaaagtcattaattaatttgtcatgtcatatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT
                                                               ||   | |    ||| ||  ||  |||| | |      |   | |  ||  ||  |  || |   || |   | ||  | |  ||  |||| |||||||||||||| || |||||||||||||| ||||| |||||  | || ||||||||||| ||||| ||||| || ||| || | || || ||| 
--------------------------------------------------------------gtataagatggggctttct-atgctatatattttcccagtgaatatgttgcctcttaaccaatttcta-tgcattataacttgcattcagGTATACCATCCAAATATTGATTTGGAAGGAAATGTATGCCTGAACATTTTGCGTGAAGATTGGAAGCCTGTTCTCAACATCAACACTGTTATTTATGGCC

upper sequence: GLYMA02G06580.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G115939_T02 (Zea mays), 3'ss of exon 5
gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatca-tacgtgtttaatct-tgcttgtgtcatatttgtggtttttccttgtctgtttcaaagtcattaattaatt---tgtcatgt-catatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT-----------------
                                                      | ||   || ||    ||  |||| || || | ||  |||      |        | | ||  ||||| ||||| || ||   ||| ||   |||  ||  |||| |||||||||||||| || |||||||| ||||| || || ||||| || || ||||||||||| ||||| ||||| || ||| |  | || || |||                  
-----------------------------------------------------gtataaggcagtattctttacatctatggttctttctgattatccactaaattacatttcttctaaagtgattaaatacttagctgttataaacatgcattcaggtgtaccatccaaatattgatttggaaGGCAATGTCTGTCTGAACATTCTGCGTGAAGATTGGAAGCCTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG

upper sequence: GLYMA02G06580.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G115939_T04 (Zea mays), 3'ss of exon 4
gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatca-tacgtgtttaatct-tgcttgtgtcatatttgtggtttttccttgtctgtttcaaagtcattaattaatt---tgtcatgt-catatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT
                                                      | ||   || ||    ||  |||| || || | ||  |||      |        | | ||  ||||| ||||| || ||   ||| ||   |||  ||  |||| |||||||||||||| || |||||||| ||||| || || ||||| || || ||||||||||| ||||| ||||| || ||| |  | || || ||| 
-----------------------------------------------------gtataaggcagtattctttacatctatggttctttctgattatccactaaattacatttcttctaaagtgattaaatacttagctgttataaacatgcattcagGTGTACCATCCAAATATTGATTTGGAAGGCAATGTCTGTCTGAACATTCTGCGTGAAGATTGGAAGCCTGTTCTCAACATCAACACCGTTATTTATGGCC

upper sequence: GLYMA02G06580.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G102421_T01 (Zea mays), 3'ss of exon 6
gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatcatacgtgtttaatcttgcttgtgtcatatttgtggtttttccttgtctgtttcaaagtcattaattaatttgtcatgt-catatatgt-agGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT
                                  ||| ||  || | |  ||||  |  ||  | | |  | | |||    |   |   ||||               || |   |   | |   | ||  |||| ||   |||  || | |||| |||||||||||||| ||  ||||||| ||||| || || ||||| || || ||||||||||| ||||| ||||| || ||| || | || || ||| 
---------------------------------gtat-aagacagtatcctttacatctatggttctttctcattctccactaaattgcattt--------------cctatgaaacgataaaatactatgttgttataaacatgcatttcagGTGTACCATCCAAATATTGATCTGGAAGGCAATGTCTGTCTGAACATTCTGCGCGAAGATTGGAAGCCTGTTCTCAACATCAACACTGTTATTTATGGCC

upper sequence: GLYMA02G06580.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G36800.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatcatacgtgtttaatcttgcttgtgtcatatttgtggtttttccttgtctgtttcaaagtcattaattaatttgtcatgtcatatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT
                                     ||   |  || |  || |  |   | ||  |  || |       |   ||| | | ||         |||| |  |  ||| || ||  ||  ||| || |||        ||||| || ||||| ||||| || ||||||||||| |||||||| |||||| | || ||||||||||||||||| || || || ||| |  | ||||||||  
------------------------------------gtaggcctctcctccttttacatgccttatatagtttacagcttctacttcaaaatcgt---------ttgtgttgtagaaactctttg-ttggttt-tcttgtt-------tagGTTTATCATCCCAATATCGATTTGGAAGGAAACGTTTGCCTGAACATCTTGCGTGAAGATTGGAAACCTGTTCTTAACATTAACACAGTTATCTACGGAC

upper sequence: GLYMA02G06580.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S61_126V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaggaactaggagatcttggttatctttggtattattaactcattcttttttatgtacatc-atac-gtgtttaatcttgcttgtgtcatatttgtggtttttccttgtctgtttcaaagtcattaattaatttgtcatgtcatatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT
                                                      |  ||| | | || | ||  | || || || ||  |  |      | |    |      |    ||||| |||| ||  ||| | |   || | ||||||| || ||||||||||||||  ||||||| ||||| || || || || || || || |||||||| ||||| || | | ||||||||||||| || ||  
---------------------------------------------------gagtagacaccgacactgagtagattcatgattttgaaacgtcatcaatctaatgtaacgattgctcaagtc-ttaacta-cttgacttacaatgtgtgtagGTTTATCATCCAAATATAGATCTGGAAGGCAATGTGTGTCTGAATATTCTTCGTGAGGATTGGAAGCCTGTGCTGAGTGTAAACTCTATCATATATGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttccttgtctgtttcaaagtcattaattaatttgtcatgtcatatatgtagGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACTCTATCATCTACGGCT
                            aattaat  putative branch site (score: 3)
               tttcaaagtcattaat  TA-rich tract