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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatgaagttcattttttatttgtgatatggcccaccttcccctcccaaattgaaggaataactgatctctttttgtcaaaatatttggaaatattttcttatgtccaattctttcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACTCACAGAAGATTATCCTTATTGGAA

Basic information

species Glycine max
transcript GLYMA02G06100.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193597866|gb|FK552814.1|FK552814
EST:     GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAAT
genomic: GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatga ... attctttcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAAT
EST: gi|6482207|gb|AW201478.1|AW201478
EST:     GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
genomic: GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatga ... attctttcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
EST: gi|23730915|gb|BU763565.1|BU763565
EST:     TATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
genomic: TATGCATGTCAGgtaatcatga ... attctttcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
EST: gi|22927419|gb|BU544558.1|BU544558
EST:     TCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
genomic: TCCATATGCATGTCAGgtaatcatga ... attctttcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
EST: gi|193562006|gb|FK519433.1|FK519433
EST:     AGAAAAGATTTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGACCAAAATGCAAAAAGAAT
genomic: AGAAAAGATTTTT-ATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatga ... attctttcagGTAAATGTTGTAAACTATAAAGCTCGG-CCAAA-TGCAAAA-GAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctctttttgtcaaaatatttggaaatattttcttatgtccaattctttcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACTCACAGAAGATTATCCTTATTGGAA
                                              ttctttc  CT-rich tract
       tttttgtcaaaatatt  TA-rich tract