1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctatatcaattatcaagtattggctaaagtcacaaaatcatacttatcattgtctttttatgctttataatgagcttaatttaatttgtctttcagcagGTCTCTCATGGTGCTATTCAGTTTACAGCATATGAGGAGCTACGCAAAGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTAGATAATCAAAACCCTG
species | Glycine max |
transcript | GLYMA02G05890.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGGATTTAGTGCACTTTACAGAGGAATTGTTACTGGTCTATTTCTG GTCTCTCATGGTGCTATTCAAGTT-ACAGCATATGAAGAACTACGCCAAA-EST: gi|51337761|gb|CO981627.1|CO981627
genomic: AAGAAGGATTTAGTGCACTTTACAGAGGAATTGTTCCTGGTCTATTTCTGgtacgtttgc ... ctttcagcagGTCTCTCATGGTGCTATTCA-GTTTACAGCATATGAGGAGCTACGC-AAAG
EST: AAGAAGGATTTAGTGCACTTTACAGAGGAATTGTTCCTGGTCTATTTCTG GTCTCTCATGGTGCTATTCAGTTTACAGCATATGAGGAGCTACGCAAAGTT
genomic: AAGAAGGATTTAGTGCACTTTACAGAGGAATTGTTCCTGGTCTATTTCTGgtacgtttgc ... ctttcagcagGTCTCTCATGGTGCTATTCAGTTTACAGCATATGAGGAGCTACGCAAAGTT
tatcattgtctttttatgctttataatgagcttaatttaatttgtctttcagcagGTCTCTCATGGTGCTATTCAGTTTACAGCATATGAGGAGCTACGCAAAGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTAGATAATCAAAACCCTG
atttaat putative branch site (score: 4)
tttgtctttc CT-rich tract
tttataatgagcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatatcaattatcaagtattggctaaagtcacaaaatcatacttatcattgtctttttatgctttataatgagcttaatttaatttgtctttcagcagGTCTCTCATGGTGCTATTCAGTTTACAGCATATGAGGAGCTACGCAAAGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTAGATAATCAAAACCCTG
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