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gtaatatatatattttttcttattagtaccttagttttctatattcactgtgccattgaaagaattgcccaacacttcttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGCTTGGTGGTACCCTTGTTCCATACTACCTTGAAGAGACAGCAAATTGGG
species | Glycine max |
transcript | GLYMA02G04320.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACA-TTGCTCTGEST: gi|20497810|gb|BQ272740.1|BQ272740
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAACAACAATTGCTCTGEST: gi|17518503|gb|BM187545.1|BM187545
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: TCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|13125648|gb|BG316218.1|BG316218
genomic: TCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|11412198|gb|BF424209.1|BF424209
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAAATATTAAATACTATCATCANGGGTCAAGACGATTGA ATTTGGGTGCAAGTCCCACAEST: gi|209697330|gb|BW655571.1|BW655571
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACA
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACEST: gi|14999822|gb|BI320636.1|BI320636
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCAC
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|213615316|gb|DB963510.1|DB963510
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGGTCCAGTCCCACAATACCCACTCTACTCAGCEST: gi|209714239|gb|BW665539.1|BW665539
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGC
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCEST: gi|193383290|gb|FK348643.1|FK348643
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGC
EST: ATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|120530295|gb|EH258429.1|EH258429
genomic: ATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|213607636|gb|DB958655.1|DB958655
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTEST: gi|37996526|gb|CF808115.1|CF808115
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTT-GGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATT
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|13562529|gb|BG550749.1|BG550749
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|120495797|gb|EH223964.1|EH223964
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|20448749|gb|BQ252873.1|BQ252873
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: GTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|192313436|gb|FK005516.1|FK005516
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|6134078|gb|AW132407.1|AW132407
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGAATGGN ATTTGGGT-CCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTEST: gi|213591868|gb|DB973419.1|DB973419
genomic: AGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGA-TGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCT
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|6566266|gb|AW233945.1|AW233945
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: GTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|209723920|gb|BW675240.1|BW675240
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG GEST: gi|209723920|gb|BW675240.1|BW675240
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccag-
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG GEST: gi|120531769|gb|EH259902.1|EH259902
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccag-
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|22522287|gb|BU081107.1|BU081107
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AGGGGGTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
gttttctatattcactgtgccattgaaagaattgcccaacacttcttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGCTTGGTGGTACCCTTGTTCCATACTACCTTGAAGAGACAGCAAATTGGG
cttcttatt CT-rich tract
tatattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatatatattttttcttattagtaccttagttttctatattcactgtgccattgaaagaattgcccaacacttcttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGCTTGGTGGTACCCTTGTTCCATACTACCTTGAAGAGACAGCAAATTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA