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gtatttatactctatacagtctctttctgttttctaatttatcttgtaaaatctttctttaaaagggagtcttaagcttagtttctaatttgttaggcaaatggattaattgcttcttgctccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG
species | Glycine max |
transcript | GLYMA02G04320.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|120490920|gb|EH219087.1|EH219087
genomic: TTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|14999822|gb|BI320636.1|BI320636
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|20497810|gb|BQ272740.1|BQ272740
genomic: GCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|120531769|gb|EH259902.1|EH259902
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|120530295|gb|EH258429.1|EH258429
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|37996526|gb|CF808115.1|CF808115
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|213590180|gb|DB963799.1|DB963799
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|193524670|gb|FK480077.1|FK480077
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATEST: gi|213594062|gb|DB961950.1|DB961950
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCAT
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|13562529|gb|BG550749.1|BG550749
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|120495797|gb|EH223964.1|EH223964
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|192313436|gb|FK005516.1|FK005516
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCATGATGGTTATCCAAC TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAEST: gi|22522287|gb|BU081107.1|BU081107
genomic: GTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
EST: CTCAGGCGTGATGGTTATCCAAC TGATCCAGAACTCATATATCTCACTGATGGTGCCAGCAAGGGGGTGATGCA
genomic: CTCAGGCGTGATGGTTATCCAACgtatttatac ... tccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCA
gcttagtttctaatttgttaggcaaatggattaattgcttcttgctccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG
ttgcttcttgctcc CT-rich tract
tttctaatttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatactctatacagtctctttctgttttctaatttatcttgtaaaatctttctttaaaagggagtcttaagcttagtttctaatttgttaggcaaatggattaattgcttcttgctccattacagTGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT