1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actctgtcaaatttgtcgttcaaaataatcttctaatttgggttgccgttttggtggttcaaattagcacaaaagtttgactggctttgtgttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTAAAG
species | Glycine max |
transcript | GLYMA02G03990.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG ACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTAEST: gi|298195403|gb|HO039234.1|HO039234
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
EST: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG ACGAAGTATTCAGGAGCAGGGGCTGCCATAAAATATGCAGTGTTGCATTTAEST: gi|20449478|gb|BQ253602.1|BQ253602
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
EST: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG ACGAAGTATTCAGGAGCAGGGGCTEST: gi|23064138|gb|BU578911.1|BU578911
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCT
EST: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG ACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTAEST: gi|13480785|gb|BG510128.1|BG510128
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
EST: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG ACGAAGTATTCAGGAGCEST: gi|20813541|gb|BQ298019.1|BQ298019
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGC
EST: AGGCCTTTATGGGCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG ACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTAEST: gi|20813542|gb|BQ298020.1|BQ298020
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
EST: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG ACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
ccgttttggtggttcaaattagcacaaaagtttgactggctttgtgttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTAAAG
gtttgac putative branch site (score: 4)
ttcaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actctgtcaaatttgtcgttcaaaataatcttctaatttgggttgccgttttggtggttcaaattagcacaaaagtttgactggctttgtgttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG