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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attctgccccttttttatggtgaaattttttgtaatagtgaagtcacggaaaatattctgctaattatactgacaattactgaatcctctgtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGACAACTTAGTGTGGTTGGTGTAG

Basic information

species Glycine max
transcript GLYMA02G02600.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31459894|gb|CD401922.1|CD401922
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|15287962|gb|BI471853.1|BI471853
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|10236299|gb|BE805187.1|BE805187
EST:     CATTTTGGAATTCTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTATGTGGGAGT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGT
EST: gi|254346945|gb|GR856667.1|GR856667
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|17022553|gb|BM093587.1|BM093587
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|27427037|gb|CA938557.1|CA938557
EST:     CATTTTGGAATTTTCTTCTTATTTTATTCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|15203212|gb|BI425980.1|BI425980
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|6913295|gb|AW394825.1|AW394825
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|208328923|gb|GE130935.1|GE130935
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|13787813|gb|BG650405.1|BG650405
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acggaaaatattctgctaattatactgacaattactgaatcctctgtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGACAACTTAGTGTGGTTGGTGTAG
                      tactgac  putative branch site (score: 1)
                                       tcctctgtttgttc  putative PPT
                taattatact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attctgccccttttttatggtgaaattttttgtaatagtgaagtcacggaaaatattctgctaattatactgacaattactgaatcctctgtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGACAACTTAGTGTGGTTGGTGTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -ctgcccc
- - - - - - - -tatggtg
- - - - - - - - - - - - - - - - - - - - - - - -ggaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgac