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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtcccttttccttcttttaagttttacttatcccctctcccagtggaaactctgtgttgcggtctaattttgtaacggttacttgcttgttactagGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGCTAACATATGCCAAATACTTGACCCAATCCCATAT

Basic information

species Glycine max
transcript GLYMA02G01990.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01990.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 6
gtgaagtcccttttccttcttttaagttttacttatcccctctcccagtggaaactctgtgttgcggtctaattttgtaacggttacttgcttgttactagGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGCTAACATATGCCAAATACTTGACCCAATCCCATAT
     ||||  || ||| | |||  ||      || |  ||               |||| |||  |  |||      |||           ||  || ||||||  | || |||||||||||||| ||||||||||||||||| || ||||| || ||||| ||  |||| ||||| || ||||| ||   | |||| | 
-----gtcctcttccctccctttctgtgggttgtaacggctacttt--------tcctgttttggtgcttaacaacaaaaca----------tgacac-agGTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCACTTCATTCCTGCTTGTAACCTATGCAAAGTACTTAACTTCAGCCCACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193419241|gb|FK382303.1|FK382303
EST:     CNGTTCCCTAATTTCTGGGACCTCTTTGTCTTCCACCCAATATACCCCAG                         GTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: CTGTTCCCTAATTTCTGGGACCTCTTTGTCTTCCACCCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
EST: gi|19345934|gb|BM890814.1|BM890814
EST:     CTGTTCCCTAATTTCTGGGACCTCTTTGTCTTCCACCCAATATACCCCAG                         GTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: CTGTTCCCTAATTTCTGGGACCTCTTTGTCTTCCACCCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtggaaactctgtgttgcggtctaattttgtaacggttacttgcttgttactagGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGCTAACATATGCCAAATACTTGACCCAATCCCATAT
                            ttgtaac  putative branch site (score: 2)
                                        cttgctt  putative PPT
                       taattttgtaa  TA-rich tract