1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agttattatagttgattgtatactacaggtgttatttttttttcctgtttgaagaaattttattttccatttgtacttatgtagaccttttaatctgcagTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
species | Glycine max |
transcript | GLYMA02G01510.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAG TATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAGEST: gi|15204414|gb|BI427182.1|BI427182
genomic: AGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaacctttt ... taatctgcagTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
EST: AGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAG TATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
genomic: AGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaacctttt ... taatctgcagTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
tgtttgaagaaattttattttccatttgtacttatgtagaccttttaatctgcagTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
ttttaat putative branch site (score: 3)
cctttt CT-rich tract
aagaaattttattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttattatagttgattgtatactacaggtgttatttttttttcctgtttgaagaaattttattttccatttgtacttatgtagaccttttaatctgcagTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - ctacagg
- - - - - - - - - - - - - - - - - - - - - -cctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtag