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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccaaacactactagtttgcttctgtatgtattttccccttttgtaaaactaatatactttcatatatgatgaatctcttttggatatttcctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG

Basic information

species Glycine max
transcript GLYMA02G01220.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01220.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 6
ccaaacactactagtttgcttctgtatgtattttccccttttgtaaaactaatatactttcatatatgatgaatctcttttggatatttcctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG
                           |||    || | || ||       |  | ||   || | | |||  | |||||||    ||| |      ||||| ||||| ||||| |||||||| ||| | ||||||||||||||||| |||||||||
---------------------------gtaaaaccctcctt-gtgctttcga-gtcctggaat-tcttatgcttttcttttgctggtttgc----atcagGTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTG

upper sequence: GLYMA02G01220.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 6
ccaaacactactagtttgcttctgtatgtattttccccttttgtaaaactaatatactttcatatatgatgaatctcttttggatatttcctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG
                           |||    | |||| ||      |   |  | |  |  | | |||  | |||||||     || |      ||||| ||||| ||||| |||||||| ||| | ||||||||||||||||| |||||||||
---------------------------gtaaaccctccttgtgc----tttcgagtcctggaattcttatgcttttcttttgctggatttc----atcagGTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286220|gb|BI470111.1|BI470111
EST:     ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTG                         GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
genomic: ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGgtacgttcac ... ctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
EST: gi|298195934|gb|HO044325.1|HO044325
EST:     GTCTCACAGGGACATAAAACCTCAAAATTTACTG                         GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
genomic: GTCTCACAGGGACATAAAACCTCAAAATTTACTGgtacgttcac ... ctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
EST: gi|207706316|gb|GD686934.1|GD686934
EST:     ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTG                         GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
genomic: ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGgtacgttcac ... ctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
EST: gi|207846087|gb|GD820304.1|GD820304
EST:     ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTG                         GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
genomic: ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGgtacgttcac ... ctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
EST: gi|207807268|gb|GD779339.1|GD779339
EST:     ATTGGAGTGTCTTCACAGGGACATAAAACCTCAAAATTTACTG                         GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
genomic: ATTGGAGTGTC-TCACAGGGACATAAAACCTCAAAATTTACTGgtacgttcac ... ctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
EST: gi|12773476|gb|BG238403.1|BG238403
EST:     ACAACTGCATTGGAGTGGCTCACAGGGACATAAAACCTCAAAATTTACTG                         GGCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
genomic: ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGgtacgttcac ... ctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
EST: gi|37994511|gb|CF806247.1|CF806247
EST:     ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTG                         GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
genomic: ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGgtacgttcac ... ctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA
EST: gi|4396096|gb|AI495093.1|AI495093
EST:     ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCANAATTTACTG                         GTCAATCCTCACACTCACCAGCTAAAGATNTGTGACTTTTGGAGTGCANAA
genomic: ACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGgtacgttcac ... ctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactaatatactttcatatatgatgaatctcttttggatatttcctgatgacagGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG
                                       tatttcct  CT-rich tract
     aatatactttcatata  TA-rich tract