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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatatatttgctctggagtttctggatttttgccataatatgtggagtgtttcactaattcaattaatcatgtagACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAG

Basic information

species Glycine max
transcript GLYMA02G01000.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01000.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G01690.1 (Arabidopsis thaliana), 3'ss of exon 4
----gtaatatatatttgctctggagtttctggatttt-tgccataatatgtggagtgtttcactaattcaat-taatcatgtagACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAG
    |||| ||  |  |  ||||  | ||  |  |||| | || | |||| |  | |  |  |  || ||||  |  |  |  || || |||||||||||| |||| || || ||||| |||||  |||||||||||   |||||||| || ||||| ||||||||
gtgagtaacatcaaacttttctgttgcttgggtcttttgtcccttcatatatatatttgtaaaacaactcaacctgcttcttcagGCGCCTGCCAAAACCACAGGGCCAAACAGTTGGTTCTTTCAGGAAGGGACTTCGAATGTTGCCAGAAGCAATATCTGCAAG

upper sequence: GLYMA02G01000.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 3'ss of exon 4
gtaatatatatttgctctggagt-ttctggatttttgccataatatgtggagtgtttcactaattcaattaatcatgtagACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAG
|||||||| ||   |   ||  | || |    || | |||| | |       ||||  |     | ||||  ||||| || ||| ||||||| |||||||| || || ||||||||||||  |||||||||||| |||||||| || |||||||||  |||
gtaatatacatgcacataggcttgttttatgattcttccatgaaa----atatgttcaatgccctgaatttttcatgcagGCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACTTATTATGTTGCCAGAAGCAATTTCTAAAAG

upper sequence: GLYMA02G01000.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ23527 (Selaginella moellendorffii), 3'ss of exon 4
gtaatatatatttgctctggagtttctggatttttgccataatatgtggagtgtttcactaattcaattaatcatgtagACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAG
                                |  | |  | ||       | |||     |||  |||     ||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||| || |||  | | ||  | || ||  |  | | 
-------------------------------gtaagtctgattaaagcagttctttttgagatttcattttcgttgtagGCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAA

upper sequence: GLYMA02G01000.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ34803 (Selaginella moellendorffii), 3'ss of exon 3
gtaatatatatttgctctggagtttctggatttttgccataatatgtggagtgtttcactaattcaattaatcatgtagACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAG
                                |  | |  | ||       | | ||    |||  |||     ||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||| || |||  | | ||  | || ||  |  | | 
-------------------------------gtaagtctgattaaagcagttctctctgagatttcattttcgttgtagGCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggatttttgccataatatgtggagtgtttcactaattcaattaatcatgtagACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAG
                                   taattcaattaatcat  TA-rich tract