1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactgcatatttgtatctgcaatatttgattcttgagttttaattattcaagctatttatactgggaattcattttcagCTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGTATGTGTGTTGATACCAGCAGAGGGGCTGCAGTAAGGGACTTAATTGCGA
species | Glycine max |
transcript | GLYMA02G00750.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGACCCCTTCCACCAAGGCTGCCGATAATTGATGGGGAG CTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGTEST: gi|192301309|gb|FG989014.1|FG989014
genomic: CAGACCCCTTCCACCAAGGCTGCCGATAATTGATGGGGAGgtactgcata ... tcattttcagCTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGT
EST: CTCACTGGATCAGACCCCTTCCACCAAGGCTGCCGATAATTGATGGGGAG CTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGT
genomic: CTCACTGGATCAGACCCCTTCCACCAAGGCTGCCGATAATTGATGGGGAGgtactgcata ... tcattttcagCTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGT
tttgattcttgagttttaattattcaagctatttatactgggaattcattttcagCTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGTATGTGTGTTGATACCAGCAGAGGGGCTGCAGTAAGGGACTTAATTGCGA
ttttaat putative branch site (score: 3)
ttcattttc putative PPT
ttttaattattcaagc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgcatatttgtatctgcaatatttgattcttgagttttaattattcaagctatttatactgggaattcattttcagCTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGTATGTGTGTTGATACCAGCAGAGGGGCTGCAGTAAGGGACTTAATTGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG