Sequence
atgc intronic sequence ATGC exonic sequence...acctttaaattatttcaaattaatcttgagcatatgtagtagatcttgttttaggtagcgtacgtgcataaggattcacactcaattgcttgtttgacagGAGAATCGTTGGTGTGGCCCATGTTGAGGATTTTGAATCCATTACTGATGCTGTTAAACGGGCTACCTGTGAACGGAAGGCTCTTAATTTGGCTAAGATG
Basic information
species | Glycine max |
transcript | GLYMA01G45520.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G45520.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0091g00100.t01 (Vitis vinifera), 3'ss of exon 5
--acctttaaattatttcaaattaatcttgagcatatgtagtagatcttg-ttttaggtagcgtacgtgcataaggattcacactcaattgcttgtttgacagGAGAATCGTTGGTGTGGCCCATGTTGAGGATTTTGAATCCATTACTGATGCTGTTAAACGGGCTACCTGTGAACGGAAGGCTCTTAATTTGGCTAAGATG
| ||| | | ||| | || | | | | | | | || | | | | | | || | ||| || | | || |||||||||| |||||||| || |||||||||||||||||||| ||| ||||||| || || |||| |||||| | |||| ||| || || ||||||
atttatgtaagtggtatcatgaaaccctgtttcttgcattcttgtcatagacttcatacaattaattttttttaagactt---ctctatctttggattcacagGAGAATTGTTGGTGTAGCACATGTTGAGGATTTTGAATCAATTGTTGATGCTAGCAAGCGAGCTAACTGTGAGAGACAGGCACTTGTATTTGCAAAGATG
upper sequence: GLYMA01G45520.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0091g00080.t01 (Vitis vinifera), 3'ss of exon 5
acctttaaattatttcaaattaatcttgagcatatgtagtagat-cttgttttaggtagcgtacgtgcataaggattcacac----tcaattgcttgtttgacagGAGAATCGTTGGTGTGGCCCATGTTGAGGATTTTGAATCCATTACTGATGCTGTTAAACGGGCTACCTGTGAACGGAAGGCTCTTAATTTGGCTAAGATG
| |||| | | ||| ||| ||| || || ||||| ||| | ||| || || | || || ||| || |||||||||| |||||||| || |||||||||||||||||||| ||| ||||||| || || |||| |||||| | |||| ||| || || ||||||
-----cgatttatataagtggtatcatgaagccctgtgttacattcttgtcatagacttcatacaattatctctttttaagacttatcgatcttttgattcacagGAGAATTGTTGGTGTAGCACATGTTGAGGATTTTGAATCAATTGTTGATGCTAGCAAGCGAGCTAACTGTGAGAGACAGGCACTTGTATTTGCAAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttttaggtagcgtacgtgcataaggattcacactcaattgcttgtttgacagGAGAATCGTTGGTGTGGCCCATGTTGAGGATTTTGAATCCATTACTGATGCTGTTAAACGGGCTACCTGTGAACGGAAGGCTCTTAATTTGGCTAAGATG
cttgttt CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acctttaaattatttcaaattaatcttgagcatatgtagtagatcttgttttaggtagcgtacgtgcataaggattcacactcaattgcttgtttgacagGAGAATCGTTGGTGTGGCCCATGTTGAGGATTTTGAATCCATTACTGATGCTGTTAAACGGGCTACCTGTGAACGGAAGGCTCTTAATTTGGCTAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - -gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacactc