Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggcattgattttgtttcagatcttatttctattgtactgcagcattttgggggcggtcctcatgttaatctgccctcgttgaggatatgtgcaattcatttcaaattttctgatattgtgttctttcatgatgctttcttggccctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGCTGGAGGTTATCATGCTGACTTCTCTACATTGGCAGAGGTCAATGAGAGT

Basic information

species Glycine max
transcript GLYMA01G43700.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020530|gb|CX707272.1|CX707272
EST:     AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
genomic: AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
EST: gi|33387576|gb|CA850783.1|CA850783
EST:     AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
genomic: AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
EST: gi|58020723|gb|CX707465.1|CX707465
EST:     AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
genomic: AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
EST: gi|31307302|gb|CD392505.1|CD392505
EST:     AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
genomic: AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
EST: gi|19052831|gb|BM731498.1|BM731498
EST:     AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
genomic: AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
EST: gi|208159452|gb|GD954291.1|GD954291
EST:     AGTGG-AATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
genomic: AGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
EST: gi|21255874|gb|BQ452762.1|BQ452762
EST:     AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCAC
genomic: AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCAC
EST: gi|208073073|gb|GD868152.1|GD868152
EST:     AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAA
genomic: AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAA
EST: gi|10255716|gb|BE823531.1|BE823531
EST:     AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAG                         TGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC
genomic: AGGAATTTAATGGAGAGTGGAAATGCCGAAGGCGTAGATCTTAGTAATAGgtatgggcat ... cctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcaaattttctgatattgtgttctttcatgatgctttcttggccctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGCTGGAGGTTATCATGCTGACTTCTCTACATTGGCAGAGGTCAATGAGAGT
         ttctgat  putative branch site (score: 3)
     aattttctgatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgggcattgattttgtttcagatcttatttctattgtactgcagcattttgggggcggtcctcatgttaatctgccctcgttgaggatatgtgcaattcatttcaaattttctgatattgtgttctttcatgatgctttcttggccctggagaagTGTGGGGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGCTGGAGGTTATCATGCTGACTTCTCTACATTGGCAGAGGTCAATGAGAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG