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gtattattctaaagttttctttatcttctatatttaactctgtcagctctggtgatttctgaaacagtgacaatgtggtaaatttgtattggtaaaatttattttaattttcatggtgtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG
species | Glycine max |
transcript | GLYMA01G43540.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCATATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAG GTTGTGAGGTCTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAEST: gi|192299883|gb|FG990091.1|FG990091
genomic: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGA
EST: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAG GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGAEST: gi|163918103|gb|EH039061.1|EH039061
genomic: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
EST: TGCTGCATTGCTT-AACTAGATGAACCTAATATAG GTTGTGAGGTTTATAACCTCGTTACAGGAAAGGGAACATCAGTTTTGGAGAEST: gi|22933171|gb|BU550310.1|BU550310
genomic: TGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
EST: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAG GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTNNNGAGAEST: gi|9898582|gb|BE607550.1|BE607550
genomic: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
EST: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAG GTTGTGAGGTTTATAACCTGNGAACAGGAAAGGGAACATCAGTTTTGGAGAEST: gi|193517169|gb|FK473409.1|FK473409
genomic: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
EST: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAG GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGAEST: gi|57574123|gb|CX547098.1|CX547098
genomic: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
EST: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAG GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGAEST: gi|209720496|gb|BW674679.1|BW674679
genomic: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
EST: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAG GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGAEST: gi|57574248|gb|CX547223.1|CX547223
genomic: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
EST: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAG GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
genomic: AGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGgtattattct ... gtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
atgtggtaaatttgtattggtaaaatttattttaattttcatggtgtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG
ttttaat putative branch site (score: 3)
taaatttgtattggta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattctaaagttttctttatcttctatatttaactctgtcagctctggtgatttctgaaacagtgacaatgtggtaaatttgtattggtaaaatttattttaattttcatggtgtatttacagGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT