Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagtatacatcaagatcaaacagaatctgtacctcactacctcatcattttgtggaacatgtttaaacaatattgacgaaaatgtggtctgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT

Basic information

species Glycine max
transcript GLYMA01G43150.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43150.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G105019_T01 (Zea mays), 3'ss of exon 8
--agagtatacatcaagatcaaacagaatctgtacctcactacctcatcattttgtggaacatgtttaaacaatattgacgaaaatgtggtctgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT
      |  | |||   |   |      | |  | || | | |   | | ||  ||  | |   | | ||     ||     |  |||| |||||   ||||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| || ||| |  |||| ||||| || ||| |||| || ||||  ||||
gtttgatgaagatcctcacttatatatgtatcgatcttattgctagaac-ttgggtttatcgaatatgaatggggtttcatgatttgtg-tctgca--tcagGAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGTGACATCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGT

upper sequence: GLYMA01G43150.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G149704_T02 (Zea mays), 3'ss of exon 8
agagtatacatcaagatcaaacagaatctgtacctcactacctcatcattttgtggaacatgtttaaacaatattgacgaaaatgtggtctgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT
   || |  ||||||||    |    | |   | |||||    | |||    |        ||||    |||||  |||    |   ||| || |  |||||||| |||||||| ||||| ||||||||||| ||||| || || ||||||||||| ||| |  |||| ||||| || ||| |||| || |||  |||||
---gtttg-atcaagat--gcccacttttaggcatcacttttacttca----gcaacttgggtttctcaaatatgaacggtgtttgtgtcggcaa--cagGAGAAGGAAGAAAAACTTGAAGGTGATGCTGCATTGAACAAGTTCTTCCGTGATATCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGGACAAGT

upper sequence: GLYMA01G43150.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0035g01560.t01 (Vitis vinifera), 3'ss of exon 3
agagtatacatcaagatcaaacagaatctgtacctcactacctcatcattttgtggaacatgtttaaacaat-attgacgaaaatgtggtctgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT
              | |       | |||  |      ||| |     ||   |     |  |||| |     ||  ||      ||||| ||   |||||||||||||||||||||| ||||| ||||| ||| |||| | ||| ||||| || ||||||| | |||||||||| ||||  || |  || |||   || |
--------------gtttgcctgcagtctagatgctgttactttggttttcattatcggaattttatatggcgatcaactctttggtggtttgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAGATTTTTCCGGGACATTTACCCAGATGCAGATGAAGACACAAGAATGGCCATGCAAAAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193409887|gb|FK371287.1|FK371287
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|207794124|gb|GD765344.1|GD765344
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208088682|gb|GD885258.1|GD885258
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|254317701|gb|GR826685.1|GR826685
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208252523|gb|GE048327.1|GE048327
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGACGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193374547|gb|FK341207.1|FK341207
EST:     GCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: GCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|16343086|gb|BI968681.1|BI968681
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193307014|gb|FK268810.1|FK268810
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTG-AAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|22933326|gb|BU550465.1|BU550465
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208338786|gb|GE139220.1|GE139220
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAANCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193358620|gb|FK326660.1|FK326660
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208256603|gb|GE054058.1|GE054058
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|23064464|gb|BU579237.1|BU579237
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208287588|gb|GE081724.1|GE081724
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208245515|gb|GE047425.1|GE047425
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|33389087|gb|CA852294.1|CA852294
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193408041|gb|FK374859.1|FK374859
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|254317168|gb|GR826113.1|GR826113
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|207735667|gb|GD713030.1|GD713030
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208269415|gb|GE070339.1|GE070339
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193362771|gb|FK327429.1|FK327429
EST:     ACCAAGGACAAAAGATTGGGATAAGTTGGAAGACTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAA-GCTTGATGGTGATGCTGCTTTGAATAA-TTGTTCCGT
genomic: ACCAAGGACAAAAGATTGGGATAAGTTGGAAG-CTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|5342531|gb|AI794815.1|AI794815
EST:     ACCAAGGACAAAAGATTGGGATAAGGTGGAAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: ACCAAGGACAAAAGATTGGGATAAGTTGGAA-GCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193550410|gb|FK506789.1|FK506789
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|6724926|gb|AW309325.1|AW309325
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|254317160|gb|GR826105.1|GR826105
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193653853|gb|FK598311.1|FK598311
EST:     AACCACGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208047336|gb|GD844433.1|GD844433
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAA
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAA
EST: gi|207826385|gb|GD799468.1|GD799468
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATG
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATG
EST: gi|14125278|gb|BG789716.1|BG789716
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193368227|gb|FK330043.1|FK330043
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208110534|gb|GD910464.1|GD910464
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATG
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATG
EST: gi|208232845|gb|GE035370.1|GE035370
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAGGCTTGA
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGA
EST: gi|209712068|gb|BW674215.1|BW674215
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208326248|gb|GE120672.1|GE120672
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208043271|gb|GD840549.1|GD840549
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCT
EST: gi|208219519|gb|GE018825.1|GE018825
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|207784102|gb|GD758412.1|GD758412
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTAGAAATAAATTGTTCC
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTT-GAA-TAAATTGTTCC
EST: gi|208194466|gb|GD992537.1|GD992537
EST:     CAAGGACAAAAGATTGGGATAAGTTGGAAGCTTCTAAGTTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: CAAGGACAAAAGATTGGGATAAGTTGGAAGC-TC-AAG-TGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193680700|gb|FK624046.1|FK624046
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAG
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAG
EST: gi|207784130|gb|GD758440.1|GD758440
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193464088|gb|FK426122.1|FK426122
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208059787|gb|GD858685.1|GD858685
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|193676875|gb|FK619131.1|FK619131
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
EST: gi|208094115|gb|GD893966.1|GD893966
EST:     AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGNG                         GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT
genomic: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttgtggaacatgtttaaacaatattgacgaaaatgtggtctgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT
                          tattgac  putative branch site (score: 2)
              atgtttaaacaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agagtatacatcaagatcaaacagaatctgtacctcactacctcatcattttgtggaacatgtttaaacaatattgacgaaaatgtggtctgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - tcaaaca
- - - - - - - - - - - - - - - - cctcact
- - - - - - - - - - - - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttt