1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgcatcttttttactttagtccagagttccaaaactgtgtcctgcacttttatggcttggtttgattgctttctgcttctttacagCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGTCTATGCTGACCATAGATGCATCAGATTCTAAGGGAAACATAGGCACAG
species | Glycine max |
transcript | GLYMA01G42920.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGTGGCCTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAG CTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGEST: gi|193426750|gb|FK391331.1|FK391331
genomic: AGGTGGCCTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAGgtttgcatct ... ttctttacagCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTG
EST: AGGTGGCCTTGAGAGAGATTATCCAAGCTGGAAATAGTGAACGTTATCAG CTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGEST: gi|254339879|gb|GR858004.1|GR858004
genomic: AGGTGGCCTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAGgtttgcatct ... ttctttacagCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTG
EST: CTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAG CTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTG
genomic: CTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAGgtttgcatct ... ttctttacagCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTG
aaactgtgtcctgcacttttatggcttggtttgattgctttctgcttctttacagCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGTCTATGCTGACCATAGATGCATCAGATTCTAAGGGAAACATAGGCACAG
gtttgat putative branch site (score: 5)
ttgctttctgcttctt CT-rich tract
acttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcatcttttttactttagtccagagttccaaaactgtgtcctgcacttttatggcttggtttgattgctttctgcttctttacagCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGTCTATGCTGACCATAGATGCATCAGATTCTAAGGGAAACATAGGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG