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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagccctaccattttagtatatgtattcttttagtgttgttatattgatgttctttattatggtctttactaatggagctagttctagTTTGTAGGTGTGTTAGTTTGGATGGAGATGCTGATCGGCTTGTTTATTTTACTGTGCCACCTGAAAGCAGTGGTAGGATTGACCTTGTTGATGGGGACAA

Basic information

species Glycine max
transcript GLYMA01G40950.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40950.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0106g00380.t01 (Vitis vinifera), 3'ss of exon 5
-gttagccctaccattttagtatatgtattcttttagtgttg--ttatattgatgttctttatta-tggtctttactaatggagctagttctagT-TTGTAGGTGTGTTAGTTTGGATGGAGATGCTGATCGGCTTGTTTATTTTACTGTGCCACCTGAAAGCAGTGGTAGGATTGACCTTGTTGATGGGGACAA----------
 ||| |   |     || | |     |||   |||  || ||  || ||| |  |||  |  | | | |    || |   |  | | |||||||| || ||||||||  || |||||||||||||||||||| ||||| |||||   ||||| |||  ||  ||     |  ||||| ||| |||||||||||||          
tgtttgtttt--tgcttaaatgatgttatatatttgatgctgagttttatagtggttagtggtaagtagagactaattgcgtggatggttctagtgttttagGTGTGCAAGCTTGGATGGAGATGCTGATCGTCTTGTATATTTCCTTGTGCTACCAAAAGACAA---CAACATTGATCTTATTGATGGGGACAAGATATTGTCT

upper sequence: GLYMA01G40950.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0012g00620.t01 (Vitis vinifera), 3'ss of exon 5
-gttagccctaccattttagtatatgtattcttttagtgttg--ttatattgatgttctttatta-tggtctttactaatggagctagttctagT-TTGTAGGTGTGTTAGTTTGGATGGAGATGCTGATCGGCTTGTTTATTTTACTGTGCCACCTGAAAGCAGTGGTAGGATTGACCTTGTTGATGGGGACAA----------
 ||| |   |     || | |     |||   |||  || ||  || ||| |  |||  |  | | |||   ||| |   |  | | |||||||| ||  |||||||  ||||||||||||||||||||||| ||||| |||||   ||||| |||  ||  ||     | |||||| |||||||||||||||||          
tgtttgtttt--tgcttaaatgatgttatatatttgatgctgagttttatagtggttagtggtaagtggagattaatcgcgtggatggttctagtgtttcagGTGTGCAAGTTTGGATGGAGATGCTGATCGTCTTGTATATTTCCTTGTGCTACCAAAAGACAA---CAAGATTGATCTTGTTGATGGGGACAAGATATTGTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgttatattgatgttctttattatggtctttactaatggagctagttctagTTTGTAGGTGTGTTAGTTTGGATGGAGATGCTGATCGGCTTGTTTATTTTACTGTGCCACCTGAAAGCAGTGGTAGGATTGACCTTGTTGATGGGGACAA
                                  tactaat  putative branch site (score: 1)
      ttatattgatgttctt  TA-rich tract