Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttcttaaaagctgacaatttttttaggaatatttattattaaattcatagtgtatgtatgctatttgtatagaagtatcttacaagatgtgggttgatttggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGAATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT

Basic information

species Glycine max
transcript GLYMA01G40130.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40130.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 3'ss of exon 5
gtaacttttcttaaaagctgacaatttttttaggaatatttattattaaattcatagt-----gtatgtatgctatttgtatagaagtatcttacaagatgtgggttgatttggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGAATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT
                      ||  | ||  |  || |   || |||| |  | |       || ||||  |   |||   | |  || ||||  | | |     ||  ||  || |||||||||||||||||||||  || || |||||||||||||| || || || ||||| ||| ||||||||||||| || |  | |||  ||| | | |||||  
----------------------aaactcttctgagatgtcctttcttaattcgagatatctcagtttgtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACTGTCC

upper sequence: GLYMA01G40130.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 3'ss of exon 6
gtaacttttcttaaaagctgacaatttttttaggaatatttattattaaattcatagt------gtatgtatgctatttgtatagaagtatcttacaagatgtgggttgatttggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGAATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT
                      ||  | ||  |  || |   || |||| ||||   |      || ||||  |   |||   | |  || ||||  | | |     ||  ||  || |||||||||||||||||||||  || || |||||||||||||| || || || ||||| ||| ||||||||||||| || |  | |||  ||| | | || ||  
----------------------aaactcttctgagatgtcctttcttaa-ttcaagatatctcagtttgtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5820402|gb|AI988608.1|AI988608
EST:     CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttc ... ggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|51343012|gb|CO983745.1|CO983745
EST:     CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttc ... ggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|48575735|gb|CO036550.1|CO036550
EST:     CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttc ... ggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|31456078|gb|CD398106.1|CD398106
EST:     TATTTTCAACTCATTTGTCTTCTGTCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: TATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttc ... ggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|8285605|gb|BE023164.1|BE023164
EST:     CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttc ... ggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|15812466|gb|BI784741.1|BI784741
EST:     CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttc ... ggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|22928584|gb|BU545723.1|BU545723
EST:     CAGATNNAGTCTTAAACACGCTTATTTTCAACTCATTNNTCTTCTGTCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttc ... ggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|22539804|gb|BU089647.1|BU089647
EST:     CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttc ... ggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgctatttgtatagaagtatcttacaagatgtgggttgatttggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGAATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT
      tatttgtata  TA-rich tract