1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatttatctactttgtttaccttgtcaatttgatcttgtagaaagtagtcaacaatatggaggtatgctaggcttttaatttttttgacacattttgtatatagGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATGGTGAGCTTAATTCTG
species | Glycine max |
transcript | GLYMA01G39520.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTATGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAG GGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAAEST: gi|193349004|gb|FK315266.1|FK315266
genomic: GTATGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGgtatttatct ... ttgtatatagGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAA
EST: GTATGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAG GGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAA
genomic: GTATGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGgtatttatct ... ttgtatatagGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAA
caacaatatggaggtatgctaggcttttaatttttttgacacattttgtatatagGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATGGTGAGCTTAATTCTG
ttttgac putative branch site (score: 3)
ttttaatttttttgac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatctactttgtttaccttgtcaatttgatcttgtagaaagtagtcaacaatatggaggtatgctaggcttttaatttttttgacacattttgtatatagGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATGGTGAGCTTAATTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT