Sequence
atgc intronic sequence ATGC exonic sequencegttagtttgatctatttcagtgttgtgaaactccctgtcattgcaatttttcacttgttactgaaaactcaaaatttccagGTGAATTTAGTAGACTGGCTCAAGAAGATGGTTAGCAACAGAAATCCAGAGGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAA
Basic information
species | Glycine max |
transcript | GLYMA01G39420.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0031g00480.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------gttagtttgatctatttcagtgttgtgaaactccctgtcat---tgcaatttttcac----ttgttactgaaaactcaa-aatttccagGTGAATTTAGTAGACTGGCTCAAGAAGATGGTTAGCAACAGAAATCCAGAGGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAA
| | ||| | | | || || | ||| | | | | || | | | ||||| | || ||| ||||| |||||||| ||||| |||||||| |||| |||||||| || ||| ||||||||||| || ||||||| ||| | |||||||| || || |||||||| | |
gtatgccctaaactacttggatcgtttcttggtgatgatttagttatgtaaaatgctgaagattgtccttttttatgtttggtcttccccattgcttttactcacaaatcaggaattttcagGTGAACTTAGTTGACTGGCTTAAGAGGATGGTTACCAGCAGGAATCCAGAGGGAGTTTTGGATCCAAAGATACCTGAGAAGCCGACTTCAAGGGCCTTGA
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ22711 (Selaginella moellendorffii), 3'ss of exon 6
gttagtttgatctatttcagtgttgtgaaactccctgtcattgcaatttttcacttgttactgaaaactcaaaatttccagGTGAATTTAGTAGACTGGCTCAAGAAGATGGTTAGCAACAGAAATCCAGAGGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAA
| | | | ||| | | | | | | ||| | |||||||||||| | |||||||||||||||| |||||| | | ||| | || | |||| ||| || | ||| ||||||||| | |||| || || |
--------------------------gtatttactcgtc-caaaagaaacttagatctcatcaaaag------aattccagGTGAATCTTGTAGACTGGCTCAAGATGATGGTCGGGAGTAGACGATCGGACGAGGTGGCGGACCCAAGGCTGGAGGAGAAACCATCGCCAAGAGCTCTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaactccctgtcattgcaatttttcacttgttactgaaaactcaaaatttccagGTGAATTTAGTAGACTGGCTCAAGAAGATGGTTAGCAACAGAAATCCAGAGGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAA
tttcc CT-rich tract
aaaactcaaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtttgatctatttcagtgttgtgaaactccctgtcattgcaatttttcacttgttactgaaaactcaaaatttccagGTGAATTTAGTAGACTGGCTCAAGAAGATGGTTAGCAACAGAAATCCAGAGGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT