Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacgagtatgtagtatcttcattacaataatccacactgaggttttcttttttttcctttagtaatattttcttatattgaatgtatacgatgaagtttgtatggtagtctcataaccttatatttttctttttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG

Basic information

species Glycine max
transcript GLYMA01G39330.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 3'ss of exon 6
gtatacgagtatgtagtatcttcat-tacaataatccacactgaggttttcttttttttcctttagtaatattttcttatattgaatgtatacgatgaagtttg-tatggtagtctcataaccttatatttttctttttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
        |||  |  |||  | ||     |||||  |   |    |||| ||||      || | ||    ||  ||   |||||  |   |  | ||   ||  | |  | |  ||||    ||| |  || ||  ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
--------gtaattgatattcttatgcttgataattgatttttttttttttttttgacaagttcattagg--ttatttgctttgaacatgatctgtaaaccatggcaagaaattaccatagtgctatgtgattgtt--tcttgcagTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183033|gb|HO028296.1|HO028296
EST:     ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
EST: gi|192326076|gb|FK016228.1|FK016228
EST:     TATTTGTAGCCAGGATTTCCACAATCAGTAACAGAAGCTACTTTCAGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: TATTTGTAGCCAGGATT-CCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
EST: gi|193362647|gb|FK327389.1|FK327389
EST:     ATATTTGTTGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCCGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
EST: gi|254318602|gb|GR832770.1|GR832770
EST:     ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
EST: gi|254337733|gb|GR845303.1|GR845303
EST:     ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGGTATACG                   
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTC---A-G-A-A-Ggtatacgagt ... tttc
EST: gi|254337733|gb|GR845303.1|GR845303
EST:     ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGGTATACG                   
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTC---A-G-A-A-Ggtatacgagt ... tttc


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgatgaagtttgtatggtagtctcataaccttatatttttctttttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
                        tcataac  putative branch site (score: 2)
                              ccttatatttttcttt  CT-rich tract
                          ataaccttatattttt  TA-rich tract