1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttggttttgtgaaatgtttttttttgttgttgagaattgagacattgtcctcgtcatttattttgtgcttaataggagtgggtttatatattaatacagGTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTGGAGTTCAAGAAAATTGGCAAAACAATTCA
species | Glycine max |
transcript | GLYMA01G39200.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGGAGATGTTGATGATGAAGCTAAAAAACTAGAGCAG GTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAAGAGTGEST: gi|192300116|gb|FG991892.1|FG991892
genomic: TGTGGAGATGTTGATGATGAAGCTAAAAAACTAGTTCAGgtaccaattt ... attaatacagGTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTG
EST: CAACTTTCTATTGTGGAGATGTTGATGATGAAGCTAAAAAACTAGTTCAC GTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTGEST: gi|51335002|gb|CO978868.1|CO978868
genomic: CAACTTTCTATTGTGGAGATGTTGATGATGAAGCTAAAAAACTAGTTCAGgtaccaattt ... attaatacagGTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTG
EST: CAACTTTCTATTGTGGAGATGTTGATGATGAAGCTAAAAAACTAGTTCAG GTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTG
genomic: CAACTTTCTATTGTGGAGATGTTGATGATGAAGCTAAAAAACTAGTTCAGgtaccaattt ... attaatacagGTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTG
ttgtcctcgtcatttattttgtgcttaataggagtgggtttatatattaatacagGTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTGGAGTTCAAGAAAATTGGCAAAACAATTCA
tattaat putative branch site (score: 2)
tttatatattaataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggttttgtgaaatgtttttttttgttgttgagaattgagacattgtcctcgtcatttattttgtgcttaataggagtgggtttatatattaatacagGTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTGGAGTTCAAGAAAATTGGCAAAACAATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -ggttttg
- - - - - - - - - - - - - gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtggg