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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaagaattcctattcatgattagttgtctaagattaaccattatctatagaactgcccacaaattaaccttctaatatctttgggttgtgttttgactagGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATACGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTC

Basic information

species Glycine max
transcript GLYMA01G39070.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39070.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtaaggaagaattcctattcatgatta-gttgtctaagattaaccattatcta--tagaactgccca-caaattaaccttctaatatctttgggttgtgttttgactagGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATACGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTC
    |  ||   |||  ||   ||||| | | |  | | |||||  || |||   ||||  | |  |  || |||||    ||||||||     || ||  |   | |||| |||||| || ||||||| ||  |||||||||| ||||| |||||||| |||||||| || |||||||||||||| || || ||||||| ||||||||
----gtgagtgatccagttgcagattatggtattcatgcttaacatttgtcttgttagatttccatagtaacttaactgattaatatctcaattttatgcctatgc-agGTTGAAGACCGGCTTTATATATACCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCTATTACAGAATCTGTTGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagaactgcccacaaattaaccttctaatatctttgggttgtgttttgactagGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATACGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTC
                        ttctaat  putative branch site (score: 2)
                           taatatcttt  TA-rich tract