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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggatttctcacttgcaaattgaatcttcacatctaattctgctatatagaagatctgtgcatcaaatagtgattttattacttttatatatttcatgtaataatagATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTG

Basic information

species Glycine max
transcript GLYMA01G38640.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38640.3 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 10
gtagggatttctcacttgcaaattgaatcttcacatctaattctgctatataga-agatctgtgcatcaaatagtgattttattacttttatatatttca-tgtaataat-agATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTG
||| |||||||   ||   ||||  || | ||| || |  || ||  |||||   |||     | ||    |||||  ||    |  | |   ||| ||| |||||| |  |||||||  ||||||| ||||||||  ||||||| ||    ||||||||||| || |||||||||||| | |||||||  |||||||||||||| |||||  
gtaaggatttcgttctcagaaatctaa-cgtcaaattttgttgtgtgatatacttagaggaacgaatttgttagtggattacaaatgtatgcttatgtcactgtaatgaccagATTTCGGGGAGGCCTAGGATTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000679|gb|BI321493.1|BI321493
EST:     TACCTGAAACTAGAGGGCTATGCTTGTCAGAAGAGCAAACTGTCACCACC                         ATTTCAAGGAGGCCAAGGATCGGAGCAGGCTACCTTTTCATAGACATGATA
genomic: TACCTGAAACTAGAGGGCTATGCTTGTCAGAAGAGCAAACTGTCACCACCgtagggattt ... gtaataatagATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGCCATAGACATGATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctgtgcatcaaatagtgattttattacttttatatatttcatgtaataatagATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTG
            aaatagtgattttatt  TA-rich tract