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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttatattagctcccaaatcttttcatcctattattaacaattagaagctaactgatggatcccttcccctcctccctccattccctgtcccgttttcttgccttttcaatcagtgcagTCTAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTT

Basic information

species Glycine max
transcript GLYMA01G38640.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38640.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 7
gtcagttatattagctcccaaatcttttcatcctattattaacaattagaagctaactgatggatcccttcccctcctccctccattccctgtcccgttttcttgccttttcaatcagtgcagTCTAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTT
          | || |     || |     | || ||| ||        ||   || | | | |||   | |          |||     ||| | |||||  || ||     ||   | ||| | |  ||||||||||||||  | ||||||||||||||||| || ||| | || ||||| |||||| | |||||||| |||||||||||||||||  | |
---------gtcagttgttcgatatagcatttctgttaatag-----gaaaataaatttaagaatctgattcgaaaa-----ccagatgttgttctgtttt--tggctc----atggtttcagCCAAAAGATACAAAATATCTCATTCTTGATGATGGTCGAAAACTGTGTCTTGAATGTCTCGACTCAGCCATTATGGACACTCATGAATGCCAACCATTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccctcctccctccattccctgtcccgttttcttgccttttcaatcagtgcagTCTAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTT
                                       ttttcaat  TA-rich tract