1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atctctggggtactgtgtataatgctggggtgctctaattctgtgttattattgaataatgtatgtggttacattatgattgatgttgctttgatatcagGTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCCGCTTATTCAGATGAAGATATACGAAAGATGCCAGCTCTACAAGGTCTTGACTATCCTTCAAAAC
species | Glycine max |
transcript | GLYMA01G34270.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAG GTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCCGCTTATTCAGATGAAEST: gi|192314970|gb|FK010788.1|FK010788
genomic: CTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAGgttatactca ... ttgatatcagGTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCCGCTTATTCAGATGAA
EST: CTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAG GTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCCGCTTATTCAGATGAA
genomic: CTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAGgttatactca ... ttgatatcagGTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCCGCTTATTCAGATGAA
ttattattgaataatgtatgtggttacattatgattgatgttgctttgatatcagGTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCCGCTTATTCAGATGAAGATATACGAAAGATGCCAGCTCTACAAGGTCTTGACTATCCTTCAAAAC
ttgcttt CT-rich tract
attgaataatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctctggggtactgtgtataatgctggggtgctctaattctgtgttattattgaataatgtatgtggttacattatgattgatgttgctttgatatcagGTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCCGCTTATTCAGATGAAGATATACGAAAGATGCCAGCTCTACAAGGTCTTGACTATCCTTCAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - tactgtg
- - - - - - - - - - - - -tggggtg
- - - - - - - - - - - - - - - - - - - ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct