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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcctgctttatctttttattattataaaaattattaaatcttcattctgcttagttctaagaaaaaagtataaaaacttgttgtctatttagtcatcttcttgcctttgccagGTCATTGCAGATATCGACAATGATGGTGTTTCAGAAATGATTGTTGCCGTTTCTTATTTCTTTGATCATGA

Basic information

species Glycine max
transcript GLYMA01G27250.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27250.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g01790.t01 (Vitis vinifera), 3'ss of exon 6
-------------gtgagttcct--gctttatctttttattattataaaaattattaaatcttcattctgcttagttctaagaaaaaagtataaaaacttgttgtctatttagtcatcttcttgcctttgccagGTCATTGCAGATATCGACAATGATGGTGTTTCAGAAATGATTGTTGCCGTTTCTTATTTCTTTGATCATGA
              |||||| |   |   |||  |||| |  || | | |||  ||    ||||  | |  |   |||     |   |   |  |   |  |||  |   |  |  |  |||||  ||   |||||||| ||||| || || |||||||| || ||||||||| ||||||| || || |||||||||||||||||
gtaagtttgaaatatgagtttcatagacatatgattttgtccttctgataatcttttttgcttctctttaatagattcaggttaggtatactttatgatacttggttgaattattgtgctcttgttttcatcagGTCATAGCAGACATTGATAATGATGGGGTGTCAGAAATGGTTGTTGCTGTGTCCTATTTCTTTGATCATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaaaaagtataaaaacttgttgtctatttagtcatcttcttgcctttgccagGTCATTGCAGATATCGACAATGATGGTGTTTCAGAAATGATTGTTGCCGTTTCTTATTTCTTTGATCATGA
                                  tcatcttcttgccttt  CT-rich tract
     aaaagtataaaaactt  TA-rich tract