1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctctatgttttagccttaaatttggtcagacaaggagttatattgtaagtgtatcctttatcaaaactgatgtgcctatgtaatctgatgttttttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG
species | Glycine max |
transcript | GLYMA01G27120.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTAGTTACAGGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|254340375|gb|GR858500.1|GR858500
genomic: CTAGTTACAGGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagctgct ... ttttttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAGGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
genomic: CTAGTTACAGGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagctgct ... ttttttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
taagtgtatcctttatcaaaactgatgtgcctatgtaatctgatgttttttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG
tgttttttcc CT-rich tract
tttatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctatgttttagccttaaatttggtcagacaaggagttatattgtaagtgtatcctttatcaaaactgatgtgcctatgtaatctgatgttttttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG
- - - - - - gccttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgatg