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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattggactgttctttactctttacttcccagcaaattaaacaatgttgtcttcataatatgtagtagaaaattttcttatgtccccatcaaaactattacagGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAGCCACCAAATGCACCAGCATTTATTGGAAACACA

Basic information

species Glycine max
transcript GLYMA01G25690.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G25690.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv17s0000g05750.t01 (Vitis vinifera), 3'ss of exon 7
gtattggactgttctttactctttacttcccagcaaattaaacaatgttgtcttcataatatgtagtag-aaaattttcttatgtcccc-atcaaaactattacagGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAGCCACCAAATGCACCAGCATTTATTGGAAACACA
      |  | || |||| ||||    ||  |   | |  |  ||  |   | |  |  | | |||| |  |||||  |     |     | | || ||  | |||||||| ||  |||||||||||||||| || |||||||||||  ||||||||||||||||||| ||||| 
------gtattttttttaatcttagtgtcatattcagtgga--aacttcaacat-gttctgtatagttgtgaaattagcaagcatgattgacctaagcttctgcagGTTGAGGGACAAAATGCTTACCAGTTCTTTCTTCAGCCACCTGATGCACCAGCATTTATTGGGAACACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttcataatatgtagtagaaaattttcttatgtccccatcaaaactattacagGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAGCCACCAAATGCACCAGCATTTATTGGAAACACA
      ataatatgtagtagaa  TA-rich tract