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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcctatctttcatagatctcatatttgggggacaatgttcaattcttttgctgatttgcggtgcagACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGACGTACCCGAGGTGGTTATTATGGAAGAGGAGGGTATGGCTATAATGGAC

Basic information

species Glycine max
transcript GLYMA01G22680.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317483|gb|FK011273.1|FK011273
EST:     CACAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAG                         ACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
genomic: CACAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAGgtaattccta ... tgcggtgcagACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
EST: gi|6502233|gb|AW203606.1|AW203606
EST:     CACAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAG                         ACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
genomic: CACAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAGgtaattccta ... tgcggtgcagACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
EST: gi|254329570|gb|GR839123.1|GR839123
EST:     CTGAACAAATCAAGATTGATACTGAG                         ACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
genomic: CTGAACAAATCAAGATTGATACTGAGgtaattccta ... tgcggtgcagACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
EST: gi|16343532|gb|BI969127.1|BI969127
EST:     CACAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAG                         ACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
genomic: CACAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAGgtaattccta ... tgcggtgcagACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
EST: gi|298181237|gb|HO022676.1|HO022676
EST:     CACAGAATGGAAGGACTAGATACTCTGAGCAAATCAAGATTGATACTGAG                         ACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA
genomic: CACAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAGgtaattccta ... tgcggtgcagACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagatctcatatttgggggacaatgttcaattcttttgctgatttgcggtgcagACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGACGTACCCGAGGTGGTTATTATGGAAGAGGAGGGTATGGCTATAATGGAC
                                     tgctgat  putative branch site (score: 3)
                             aattctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattcctatctttcatagatctcatatttgggggacaatgttcaattcttttgctgatttgcggtgcagACGTTTGGCGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGTGGACGTACCCGAGGTGGTTATTATGGAAGAGGAGGGTATGGCTATAATGGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG