1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttgtaggatataactactttatattttaatggctgttttttctacagtttggctttgcttccatttgtttggaaatttagcgttggattattgctttggttcttttattatgttctcttgcactctatttaattaaaatattgtttgttgttgataattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTCCACAGGCAGCACAACCAG
species | Glycine max |
transcript | GLYMA01G20670.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTEST: gi|5508981|gb|AI855539.1|AI855539
genomic: T-CGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
EST: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTEST: gi|254337503|gb|GR845180.1|GR845180
genomic: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
EST: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTEST: gi|57575208|gb|CX548183.1|CX548183
genomic: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
EST: TTCGTGCTGCTTATAACAACCNTGAGAGAGCTGTTGAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTEST: gi|254343685|gb|GR857441.1|GR857441
genomic: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
EST: GAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTEST: gi|254341730|gb|GR852867.1|GR852867
genomic: GAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
EST: GAGAGAGCTGTTGAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTEST: gi|21888703|gb|BQ741916.1|BQ741916
genomic: GAGAGAGCTGTTGAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
EST: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTEST: gi|151395622|gb|EV265499.1|EV265499
genomic: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
EST: TTCGTGCTGCCTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTEST: gi|7146671|gb|AW508593.1|AW508593
genomic: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
EST: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCC GGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
genomic: TTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCgtatgttgta ... taattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGT
atgttctcttgcactctatttaattaaaatattgtttgttgttgataattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTCCACAGGCAGCACAACCAG
tgttgat putative branch site (score: 4)
tatttaattaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgtaggatataactactttatattttaatggctgttttttctacagtttggctttgcttccatttgtttggaaatttagcgttggattattgctttggttcttttattatgttctcttgcactctatttaattaaaatattgtttgttgttgataattgttagGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTCCACAGGCAGCACAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT