1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttgttaatctatttatataccagtgagaaaagacttatactcagtatagatgcctgatgttgcttttgtacattctgaacattatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCATTACATCCACCTCAACCTGGGCTGATTC
species | Glycine max |
transcript | GLYMA01G09400.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGT-AATCCACGGCTGGATTTTAATATT-NAGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATEST: gi|6341849|gb|AW164673.1|AW164673
genomic: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGAT
EST: AGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATEST: gi|207760295|gb|GD732722.1|GD732722
genomic: AGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGAT
EST: ATTTTAATATTGAAGGACTTCTTGCTAAAGAT ATTCTTCAAACAACGGCCTGGTCCTEST: gi|208231305|gb|GE033494.1|GE033494
genomic: ATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAA-CAACGGCCTGGTCCT
EST: AGTAAATCCACGGCTGGTATTTTAATATTNA-GGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAEST: gi|207786833|gb|GD759240.1|GD759240
genomic: AGTAAATCCACGGCTGG-ATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTA
EST: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGATEST: gi|207758671|gb|GD728717.1|GD728717
genomic: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGAT
EST: TTTTAATA-TGAAGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGGTCCTEST: gi|208286194|gb|GE084236.1|GE084236
genomic: TTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCT
EST: ATTTTAATATTGAAGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGGTCCTEST: gi|193500586|gb|FK464089.1|FK464089
genomic: ATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCT
EST: CAGTAAATCCACGGCTGGATTTTAATATTGA-GGACTTCTTGCTAAAGAC ATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATEST: gi|208060930|gb|GD857510.1|GD857510
genomic: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGAT
EST: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGGTCCTEST: gi|15203048|gb|BI425816.1|BI425816
genomic: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCT
EST: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT ATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGAT
genomic: CAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATgtaagttgtt ... attatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGAT
tatactcagtatagatgcctgatgttgcttttgtacattctgaacattatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCATTACATCCACCTCAACCTGGGCTGATTC
gcctgat putative branch site (score: 4)
aacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgttaatctatttatataccagtgagaaaagacttatactcagtatagatgcctgatgttgcttttgtacattctgaacattatgtcagATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCATTACATCCACCTCAACCTGGGCTGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT