1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaaagtatattgctatcatttgctgtctcttttttttttcttgtctagctacgttgaaaaacttacacttacaattatcttattgcttgctaccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTGGTCTCACATGATATCGCTAGGACGGTGTCCAAGAAATTCAGAGAGAACC
species | Glycine max |
transcript | GLYMA01G05860.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTGEST: gi|22525497|gb|BU084308.1|BU084308
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
EST: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG GAATGGAGCGAAGGAACTTATCCTCCTTGGEST: gi|193521509|gb|FK481698.1|FK481698
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGG
EST: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGEST: gi|11412343|gb|BF424354.1|BF424354
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCG
EST: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTGEST: gi|193445872|gb|FK414951.1|FK414951
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
EST: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTGEST: gi|192312705|gb|FK004393.1|FK004393
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
EST: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
tagctacgttgaaaaacttacacttacaattatcttattgcttgctaccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTGGTCTCACATGATATCGCTAGGACGGTGTCCAAGAAATTCAGAGAGAACC
cacttac putative branch site (score: 2)
ctacctt putative PPT
ttacaattatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagtatattgctatcatttgctgtctcttttttttttcttgtctagctacgttgaaaaacttacacttacaattatcttattgcttgctaccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTGGTCTCACATGATATCGCTAGGACGGTGTCCAAGAAATTCAGAGAGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - tgctatc
- - - - - - - - - - tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgc